Find shape and structure in high-dimensional data with topology.
Data Science & Analytics
Module-by-module breakdown of Topological Data Analysis (TDA): Persistent Homology for High-Dimensional Datasets, from foundations to a certified capstone project.
Motivation
β’ Structure that clustering and PCA miss, such as loops and voids
β’ Topological invariants and what stays true under continuous deformation
β’ Realistic expectations: TDA is a complement to, not a replacement for, statistics
Complexes
β’ Simplicial complexes, and the Vietoris-Rips and Cech constructions
β’ The scale parameter problem that persistence exists to solve
β’ Homology groups and Betti numbers as counts of connected components, loops and voids
Persistence
β’ Filtrations, persistence diagrams and barcodes
β’ Reading persistence as signal and short bars as noise, with care
β’ The stability theorem and why it makes the method trustworthy
Practice
β’ Ripser, GUDHI and giotto-tda, and the computational cost in higher dimensions
β’ Persistence images and landscapes to feed a machine learning model
β’ Bottleneck and Wasserstein distances for comparing diagrams
Application
β’ Case studies in transcriptomics, materials and time series via delay embedding
β’ Metric choice and normalisation, which change the result more than expected
β’ Statistical significance and avoiding topological signal read from noise
e-Certificate and e-Marksheet issued on successful completion.